Models List
View all available models
To view all available models for your current installation of dorado use:
This page contains the list of available simplex and modified basecalling models.
Please read important information on Understanding Model Names especially the section on Model Version Numbers.
The bolded models are for the latest released condition.
DNA Models
| Basecalling Models | Compatible Modifications |
Modifications Model Version |
Data Sampling Frequency |
|---|---|---|---|
| dna_r10.4.1_e8.2_400bps_fast@v5.0.0 | 5 kHz | ||
| dna_r10.4.1_e8.2_400bps_hac@v5.0.0 | 4mC_5mC 5mCG_5hmCG 5mC_5hmC 6mA |
v2 v2 v2 v2 |
5 kHz |
| dna_r10.4.1_e8.2_400bps_sup@v5.0.0 | 4mC_5mC 5mCG_5hmCG 5mC_5hmC 6mA |
v2 v2.0.1 v2.0.1 v2 |
5 kHz |
| dna_r10.4.1_e8.2_400bps_fast@v4.3.0 | 5 kHz | ||
| dna_r10.4.1_e8.2_400bps_hac@v4.3.0 | 5mCG_5hmCG 5mC_5hmC 6mA |
v1 v1 v2 |
5 kHz |
| dna_r10.4.1_e8.2_400bps_sup@v4.3.0 | 5mCG_5hmCG 5mC_5hmC 6mA |
v1 v1 v2 |
5 kHz |
| dna_r10.4.1_e8.2_400bps_fast@v4.2.0 | 5mCG_5hmCG | v2 | 5 kHz |
| dna_r10.4.1_e8.2_400bps_hac@v4.2.0 | 5mCG_5hmCG | v2 | 5 kHz |
| dna_r10.4.1_e8.2_400bps_sup@v4.2.0 | 5mCG_5hmCG 5mC_5hmC 5mC 6mA |
v3.1 v1 v2 v3 |
5 kHz |
| dna_r10.4.1_e8.2_400bps_fast@v4.1.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_400bps_hac@v4.1.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_400bps_sup@v4.1.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_260bps_fast@v4.1.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_260bps_hac@v4.1.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_260bps_sup@v4.1.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_400bps_fast@v4.0.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_400bps_hac@v4.0.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_400bps_sup@v4.0.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_260bps_fast@v4.0.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_260bps_hac@v4.0.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_260bps_sup@v4.0.0 | 5mCG_5hmCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_260bps_fast@v3.5.2 | 5mCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_260bps_hac@v3.5.2 | 5mCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_260bps_sup@v3.5.2 | 5mCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_400bps_fast@v3.5.2 | 5mCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_400bps_hac@v3.5.2 | 5mCG | v2 | 4 kHz |
| dna_r10.4.1_e8.2_400bps_sup@v3.5.2 | 5mCG | v2 | 4 kHz |
| dna_r9.4.1_e8_sup@v3.6 | 4 kHz | ||
| dna_r9.4.1_e8_fast@v3.4 | 5mCG_5hmCG 5mCG |
v0 v0.1 |
4 kHz |
| dna_r9.4.1_e8_hac@v3.3 | 5mCG_5hmCG 5mCG |
v0 v0.1 |
4 kHz |
| dna_r9.4.1_e8_sup@v3.3 | 5mCG_5hmCG 5mCG |
v0 v0.1 |
4 kHz |
RNA Models
Warning
The BAM format does not support U bases.
Therefore, when Dorado is performing RNA basecalling, the resulting output files will include T instead of U.
This is consistent across output file types.
The same applies to parsing inputs.
Any input HTS file (e.g. FASTQ generated by guppy/basecall_server) with U bases is not handled by Dorado.
| Basecalling Models | Compatible Modifications |
Modifications Model Version |
Data Sampling Frequency |
|---|---|---|---|
| rna004_130bps_fast@v5.1.0 | 4 kHz | ||
| rna004_130bps_hac@v5.1.0 | m5C m6A_DRACH inosine_m6A pseU |
v1 v1 v1 v1 |
4 kHz |
| rna004_130bps_sup@v5.1.0 | m5C m6A_DRACH inosine_m6A pseU |
v1 v1 v1 v1 |
4 kHz |
| rna004_130bps_fast@v5.0.0 | 4 kHz | ||
| rna004_130bps_hac@v5.0.0 | m6A m6A_DRACH pseU |
v1 v1 v1 |
4 kHz |
| rna004_130bps_sup@v5.0.0 | m6A m6A_DRACH pseU |
v1 v1 v1 |
4 kHz |
| rna004_130bps_fast@v3.0.1 | 4 kHz | ||
| rna004_130bps_hac@v3.0.1 | 4 kHz | ||
| rna004_130bps_sup@v3.0.1 | m6A_DRACH | v1 | 4 kHz |
| rna002_70bps_fast@v3 | 3 kHz | ||
| rna002_70bps_hac@v3 | 3 kHz |